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- DirectorEmile B. LevisettiStarsEmily DeschanelDavid BoreanazMichaela ConlinMr. White and his team of government agents put the Jeffersonian Lab on lock down and demand that Brennan and her forensics team determine a cause of death for an unidentified, but highly classified set of remains. As the team gets to work, their findings lead them to suspect they are investigating one of the most famous presidential assassinations in history. Meanwhile, Booth's boss, Andrew Hacker, helps him break into the lab and determine the motive behind the mystery investigation, and a frustrated Cam worries that Michelle may be keeping a big secret from her.
- DirectorDavid BoreanazStarsEmily DeschanelDavid BoreanazMichaela ConlinA severe blizzard causes a city-wide blackout, adding to the obstacles the team must overcome in order to solve a murder case that could be linked to a potential viral outbreak. But when Booth and Brennan find themselves trapped in an elevator during the power outage, Sweets is on hand for outside assistance, but does more than what's asked of him when he initiates a touchy conversation about Booth and Brennan's relationship. Meanwhile, Angela and Hodgins get worrisome news about the health of their unborn baby, and Hodgins and "squint" Wendell Bray get creative in the lab and put their scientific skills to use to identify the victim and the rare disease.
- DirectorDaniel SackheimStarsEmily DeschanelDavid BoreanazMichaela ConlinSam Nozik's beetles-eaten corpse in a Florida glade is identified from his acrylic eye. He worked in a Miami museum, from which a treasure map to a Spanish galleon was stolen. Booth grudgingly allows his superstitious former foreign army tour acquaintance Walter Sherman (and his team of two) to use his 'tracing gift' to find and retrieve the treasure. They do, after consulting bishop Edward Galano on period navigation, and find the corpse, but meanwhile the diver herself has been murdered too. Booth meanwhile comes to terms with his grudge against Walter as 'insensitive' MP.
- DirectorDwight H. LittleStarsEmily DeschanelDavid BoreanazMichaela ConlinA mysterious young deaf girl is thought to have committed a recent murder after she's found on the streets, covered in blood and holding a knife. It's up to the Jeffersonian team to figure out who this girl is and determine if she's really the one to blame for the murder.
- DirectorIan ToyntonStarsEmily DeschanelDavid BoreanazMichaela ConlinA generally disliked member of Max Keenan's bowling team's corpse is found as a decomposing mess in the cones machinery when that renovated section is reopened, but he was knocked dead a week earlier. Booth, good at the game, and Bones go undercover as new team members to study players and staff, which yields lots of grim grudges. Wendell has a hard time standing in, with online assistance, for Angela, who finally gives birth.
- DirectorIan ToyntonStarsEmily DeschanelDavid BoreanazMichaela ConlinA paint-ball team accidentally finds in a national park the consumed corpse of a woman, soon identified from dental records as the wife of protestant minister Joseph Serrano. She was declared missing six months ago, then returned with serious amnesia treated by eccentric specialist psychiatrist Dr. David Yarzick, and again recently. Further forensics on corpse and grave reveal traces of water-resistant burial and repeated forms of abuse and different times. Sweets also tries to counsel Booth and Bones as they bicker over the correct impact of their pregnancy on living arrangements and couple dynamics.
- DirectorJeannot SzwarcStarsEmily DeschanelDavid BoreanazMichaela ConlinA storm chaser with a shot at becoming professional may be murdered, but his corpse is mangled with half a neighborhood by the last tornado he studied. Booth, assisted by Lance as he refuses to bring his unborn child to danger zones, checks on the brother, who reluctantly financed the victim's top-notch home-made storm chaser-mobile, his surviving driver and competitors. Bones ignores all safety advice to consult storm chasers on the next tornado site. Hodgins comes up with a lullaby contraption and lies to prevent Angela's father from babysitting but revises his opinions on both.
- DirectorKate WoodsStarsEmily DeschanelDavid BoreanazMichaela ConlinBody parts float up in a toilet. The team determine the deceased was a prisoner. Booth wants Brennan to take it easy since she is near her due date. Dr Brennan & Booth go to the prison to find the killer. Afterwards, Brennan gives birth.
- DirectorDwight H. LittleStarsEmily DeschanelDavid BoreanazMichaela ConlinFinn Abernathy's Dixie country experience proves as useful as his IQ in figuring out a female corpse smeared over half a mile of interstate road by Alan Bates's truck. The victim, farmer's wife Barb, was a fanatic even by the standards of her coupon addicts club, all of whom bicker and bother Chad Fergus's supermarket, where a cashier was filmed beating Barb. Her husband Dale Berquist spend lonely nights dining with other women. Finn proves a perfect gentleman when Michelle shows interest in dating him, yet now Camille re-questions his past.
- DirectorDwight H. LittleStarsEmily DeschanelDavid BoreanazMichaela ConlinA West Virginia truffle hunter's hog stumbles upon a corpse in the woods. The killing may fit in over a century of vicious, vivid feud between the neighboring Babcock and Mobley families, which a lawyer in the family had until recently converted into endless litigation. Natural resources and forbidden love may also prove crucial. Sweets gets to interrogate on his own while Booth is preoccupied with stopping Bones from chasing all baby-caregivers, even her own father.
- DirectorIan ToyntonStarsEmily DeschanelDavid BoreanazMichaela ConlinMonths later, Brennan is still on the run from the FBI, after being framed for murder by Christopher Pelant. The remaining team searches for the real killer.
- DirectorAlex ChappleStarsEmily DeschanelDavid BoreanazMichaela ConlinBrennan and Booth enter a dance competition to find a killer of a contestant. After the killer is caught, Brennan still wants to enter the competition for the judges.
- DirectorTawnia McKiernanStarsEmily DeschanelDavid BoreanazMichaela ConlinThe dismembered body of a roller derby skater means Angela goes undercover at the rink to find more clues to the woman's murder. Elsewhere, Cam worries over the sheer number of doctor appointments Booth is going to, and presses him for details.
- DirectorJeannot SzwarcStarsEmily DeschanelDavid BoreanazMichaela ConlinThe Jeffersonian team investigates the murder of a TV producer. Meanwhile, Brennan has trouble accepting the fact that Christine might be an "average" child, when her daughter gets accused of biting another classmate. Then, Hodgins uses all of his tools at the Jeffersonian to chemically recreate Finn's (guest star Luke Kleintank) special hot sauce.
- DirectorJeannot SzwarcStarsEmily DeschanelDavid BoreanazMichaela ConlinBrennan & Booth are in Buenos Aires for their honeymoon. Brennan is not used to sitting idle so she takes Booth to a morgue, and she finds unidentified bones of a victim. She and Booth help the local police solve the crime.
- DirectorKevin HooksStarsEmily DeschanelDavid BoreanazMichaela ConlinBrennan and Booth are to be married tomorrow, but not without a murder to solve. The team calls in all interns to help with the case so Brennan does not have to do anything.
- DirectorTim SouthamStarsEmily DeschanelDavid BoreanazMichaela ConlinThe Jeffersonian team investigates the murder of a food scientist whose remains were tossed in a meat grinder and mixed into cans of stew served in a school cafeteria. When the team uncovers the scientist's newest - and highly lucrative - food invention, they begin to track the trail of jealous competitors in the multi-million dollar food industry. Meanwhile, Angela plans a post-wedding bachelorette party for Brennan and it gets crazier than intended.
- DirectorMilan CheylovStarsEmily DeschanelDavid BoreanazMichaela ConlinThe Jeffersonian team investigates the murder of Lauren Frank, a kidnap victim whose remains were found buried at a park. But when they discover the unhappy relationship that Lauren had with her stepmother, the team starts to think the killer was someone closer to the girl than expected. Meanwhile, Hodgins uncovers a shocking secret about his family and Brennan and Booth face a common couples dilemma - whether to co-mingle their funds.
- DirectorJeffrey WalkerStarsEmily DeschanelDavid BoreanazMichaela ConlinA repo man's remains are found in a septic tank, and the Jeffersonian team must work together to figure out who the killer is. When the team discovers that the victim had a troubled past, some key witnesses from his earlier days become potential suspects. Meanwhile, handsome and charming Rodolfo Fuentes has defected from Cuba, where he was a forensic anthropologist, but now needs an internship to complete his degree. Brennan agrees to try him out as an intern on a case, and Brennan and Booth discuss whether or not Christine should have a religious upbringing.
- DirectorIan ToyntonStarsEmily DeschanelDavid BoreanazMichaela ConlinDuring Bones' stay in England, the daughter of an American businessman is murdered. The businessman insists that the FBI help with the case, so Booth and Bones investigate. Meanwhile, Angela's husband shows up at the Jeffersonian.
- DirectorSteven DePaulStarsEmily DeschanelDavid BoreanazMichaela ConlinPart of a leg drops into an elevator. The gruesome discovery finds the body had been in the shaft for a few days. The victim was an office manager who was disliked by everyone. As the team investigates, Angela and Hodgins come to terms with their break up.
- DirectorJeff WoolnoughStarsEmily DeschanelDavid BoreanazMichaela ConlinBrennan and Booth investigate the death of a Santa as Bones tries to give her father the Christmas he's always dreamed of, and Booth comes to terms with not spending the holiday with Parker.
- DirectorDwight H. LittleStarsEmily DeschanelDavid BoreanazMichaela ConlinThe remains of a set of conjoined twins are found on an oil field. When they find out the twins worked at a circus, Bones and Booth go undercover to find the culprit.
- DirectorIan ToyntonStarsEmily DeschanelDavid BoreanazMichaela ConlinThe Gravedigger returns and captures Booth. He wants the evidence that someone has stolen from the case, and he believes that Bones has it. Can the Squints find their friend before Booth becomes the Gravediggers latest casualty?
- DirectorIan ToyntonStarsEmily DeschanelDavid BoreanazMichaela ConlinStory of a murder in a nightclub with multiple suspects, with familiar faces in a different perspective. When the story's finished, Booth's health crisis takes an unexpected twist.