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1-26 of 26
- While infiltrating Cobra Tower in New York, Scarlett and Snake Eyes uncover a plot by a mysterious ninja who attempts to take down Cobra Commander.
- Heavy Duty is recruited by Flint to help bring in his cousin Roadblock; unfortunately for both men and the Joes, Major Bludd is seeking vengeance for the scars received in their last encounter.
- Investigating a missing kid from Tunnel Rat's old neighborhood, the Joes head to Brooklyn, where they discover an urban legend about a monster in the sewers may in fact be true.
- The Joes infiltrate a global telecommunications conference hosted by the Baroness at her ancestral castle. There, they uncover a Cobra plot to enslave the world via cell phones, while meeting an unexpected ally.
- On a mission to capture Mindbender, the Joes become entranced and are trapped in a cult-like commune run by the eerily charismatic twin brothers Tomax and Xamot.
- The Joes raid a Cobra medical facility looking for information on the alleged inhumane experimentations being conducted as well as a mysterious 'Patient X'.
- Flint and Lady Jaye use Zartan to track the Joes, who in turn track the Baroness while transporting a high-tech camouflage suit to Cobra Commander.
- With the Joes in Flint's military custody, the Baroness tries to capture from the military train that they are on.
- Duke gets accidentally arrested and thrown into a prison where the warden is making prisoners fight each other.
- The Joes head to Canada to hide out with a less than welcoming Snow Job, and are unknowingly followed by Storm Shadow and the prototype Shadow-Vipers.
- A team of Joe soldiers are sent to investigate Cobra Pharmaceuticals. Their job is to infiltrate the facility to gather information on it's real purpose.
- The Joes locate a bio-viper manufacturing facility and are met with resistance from Firefly, a Cobra saboteur who threatens to burn the surrounding town to the ground.
- The Joes investigate a missing scientist at a Cobra lab and discover Cobra's plot to release a highly contagious virus into the population.
- Duke heads home to Missouri to protect his family from a Cobra attack.
- The Joes go on the attack, infiltrating Cobra's stronghold in order to stop them from utilizing a powerful weapon.
- Investigating a series of mysterious earthquakes, the Joes head underground and discover an elaborate network of tunnels being constructed by Cobra to connect their multiple strongholds across the country.
- The Joes enlist the help of sea captain Shipwreck to help them transport a canister of evidence abducted from a Cobra lab; unfortunately the trip is anything but smooth sailing.
- 2010–201123mTV-Y7-FV7.5 (18)TV EpisodeAfter Storm Shadow ambushes the Joes and kidnaps Jinx, the team must regroup and hunt down their attacker.
- Zartan and his motorcycle gang terrorize a small town and it's up to the Joes to put a stop to them.
- With the help of an inside source, the Joes infiltrate a Cobra stronghold where Mindbender and McCullen work together to produce the ultimate exo-armor weapon.
- 2010–201123mTV-Y7-FV7.4 (18)TV EpisodeThe Joes take refuge at Snake Eyes' dojo and as they train they discover insight into Snake Eyes' checkered past with Storm Shadow.
- Investigating Cobra's 'BioDag' delivery system, the Joes travel to Scotland where they become trapped inside Destro's castle! A game of cat and mouse ensues as the Joes search for an escape from the deadly mansion.
- Major Bludd, a mercenary hired by the Baroness, tracks down a target for assassination; luckily the Joes are on hand to run interference.
- Cobra works to finalize deployment of a scientific apparatus that could give them unimaginable power; and it turns out Scarlett holds the key to its use.
- The team are framed for the explosion at Cobra Pharmaceuticals and are now known as the "Renegades" by the media, and must go on the run.
- A Cobra agent posing as a preacher kidnaps Tunnel Rat and uses him to test a weaponized armour.