A mysterious creature from the Moon lands on Earth and starts a chaos. The team and Godzilla have to stop it because it's affecting the water currents globally.
The team gets caught in a strange-looking hurricane. They end up in a city in the clouds. The inhabitants there want Godzilla and the evil power dragon to battle each other. Meanwhile the inhabitants plot to rule Earth.
On their way to visit an oil rig, the team is captured by a mad scientist, who clones people and animals. He intends to clone the team and use them to steal the oil and make him a fortune.
The team is stranded on an island inhabited by a creature named Axor. Captain Majors, Quinn and Brock become slaves and put to work. It's up to Pete, Godzooky and Godzilla to rescue them.