The episode 'Colonel Cluster Fuck' was cut to remove a threat against the then-president of the United States, George Bush. It was later added as part of the DVD.
Some of the videos have different fonts or alternate subtitles; like "The Tourettes Guy's Dad Shows up for a visit during Danny's Son's Graduation Party" and the replacement: "THE TOURETTES GUY'S DAD SHOWS UP FOR A VISIT".