In a previous episode, when the arm of an undead Transformer got cut off, it ceased to function. Yet in this episode, when zombie Skyquake's arm gets blown off, it resumes "living".
Starscream has proved himself to be an incredibly unreliable and traitorous minion, yet Megatron allows him to leave the operating table and roam freely on the Decepticon ship without supervision, even when he's in a terrible condition.
Arcee doesn't notice the kids running into the Ground Bridge, despite their shouts. Also, Jack wanted to stop Miko from reaching the Bridge, yet for some reason, he never asks Arcee for help.